2017

    The impact of control strategies and behavioural changes on the elimination of Ebola from Lofa County, Liberia.
    S. Funk, I. Ciglenecki, A. Tiffany, E. Gignoux, A. Camacho, R. M. Eggo, A. J. Kucharski, W. J. Edmunds, J. Bolongei, P. Azuma, P. Clement, T. S. Alpha, E. Sterk, B. Telfer, G. Engel, L. A. Parker, M. Suzuki, N. Heijenberg, B. Reeder.
    Philos T R Soc B 372(1721).
    [PDF]

    Disease severity determines health-seeking behaviour amongst individuals with influenza-like illness in an internet-based cohort.
    M. Peppa, W. J. Edmunds, S. Funk.
    BMC Infect Dis 17:238.
    [PDF]

    Spatial and temporal dynamics of superspreading events in the 2014–2015 West Africa Ebola epidemic.
    M. S. Y. Lau, B. D. Dalziel, S. Funk, A. McClelland, A. Tiffany, S. Riley, C. J. E. Metcalf, B. T. Grenfell.
    Proc Natl Acad Sci U S A 114(9):2337–2342.
    [PDF]

    Aedes aegypti Control Through Modernized, Integrated Vector Management.
    L. Yakob, S. Funk, A. Camacho, O. Brady, W. J. Edmunds.
    PLoS Curr 2017 Jan 30. Edition 1.
    [PDF]

    Real-time dynamic modelling for the design of a cluster-randomized phase 3 Ebola vaccine trial in Sierra Leone.
    A. Camacho, R. Eggo, N. Goeyvaerts, A. Vandebosch, R. Mogg, S. Funk, A. Kucharski, C. Watson, T. Vangeneugden, W. Edmunds.
    Vaccine 35(4):544–551.
    [PDF]

    Mathematical Modeling of Programmatic Requirements for Yaws Eradication.
    M. Marks, O. Mitjà, C. Fitzpatrick, K. Asiedu, A. W. Solomon, D. C. Mabey, S. Funk.
    Emerg Infect Dis 23(1):22.

2016

    Comparative Analysis of Dengue and Zika Outbreaks Reveals Differences by Setting and Virus.
    S. Funk, A. J. Kucharski, A. Camacho, R. M. Eggo, L. Yakob, L. M. Murray, W. J. Edmunds.
    PLoS Negl Trop Dis 10(12):1-16.
    [PDF]

    Real-time forecasting of infectious disease dynamics with a stochastic semi-mechanistic model.
    S. Funk, A. Camacho, A. J. Kucharski, R. M. Eggo, W. J. Edmunds.
    Epidemics in press.
    [PDF]

    Transmission Dynamics of Zika Virus in Island Populations: A Modelling Analysis of the 2013-14 French Polynesia Outbreak.
    A. J. Kucharski, S. Funk, R. M. Eggo, H. Mallet, W. J. Edmunds, E. J. Nilles.
    PLoS Negl Trop Dis 10(5):e0004726.
    [PDF]

    Effectiveness of Ring Vaccination as Control Strategy for Ebola Virus Disease.
    A. J. Kucharski, R. M. Eggo, C. H. Watson, A. Camacho, S. Funk, W. J. Edmunds.
    Emerg Infect Dis 22(1):105–108.

2015

    Duration of Ebola virus RNA persistence in semen of survivors: population-level estimates and projections.
    R. M. Eggo, C. H. Watson, A. Camacho, A. J. Kucharski, S. Funk, W. J. Edmunds.
    Euro Surveill 20(48):30083.
    [PDF]

    Estimating the probability of demonstrating vaccine efficacy in the declining Ebola epidemic: a Bayesian modelling approach.
    A. Camacho, R. M. Eggo, S. Funk, C. H. Watson, A. J. Kucharski, W. J. Edmunds.
    BMJ Open 5(12):e009346.
    [PDF]

    Measuring the impact of Ebola control measures in Sierra Leone.
    A. J. Kucharski, A. Camacho, S. Flasche, R. E. Glover, W. J. Edmunds, S. Funk.
    Proc Natl Acad Sci U S A 112(46):14366–14371.
    [PDF]

    Updated estimate of the duration of the meningo-encephalitic stage in gambiense human African trypanosomiasis.
    F. Checchi, S. Funk, D. Chandramohan, D. T. Haydon, F. Chappuis.
    BMC Res Notes 8:292.
    [PDF]

    Evaluation of the benefits and risks of introducing Ebola community care centers, Sierra Leone.
    A. J. Kucharski, A. Camacho, F. Checchi, R. Waldman, R. F. Grais, J. Cabrol, S. Briand, M. Baguelin, S. Flasche, S. Funk, W. J. Edmunds.
    Emerg Infect Dis 21(3):393–399.

    Nine challenges in incorporating the dynamics of behaviour in infectious diseases models.
    S. Funk, S. Bansal, C. T. Bauch, K. T. D. Eames, W. J. Edmunds, A. P. Galvani, P. Klepac.
    Epidemics 10:21–25.
    [PDF]

    Five challenges in evolution and infectious diseases.
    C. J. E. Metcalf, R. B. Birger, S. Funk, R. D. Kouyos, J. O. Lloyd-Smith, V. A. A. Jansen.
    Epidemics 10:40–44.
    [PDF]

    Seven challenges in modeling vaccine preventable diseases.
    C. J. E. Metcalf, V. Andreasen, O. N. Bjørnstad, K. Eames, W. J. Edmunds, S. Funk, T. D. Hollingsworth, J. Lessler, C. Viboud, B. T. Grenfell.
    Epidemics 10:11–15.
    [PDF]

    Nine challenges in modelling the emergence of novel pathogens.
    J. O. Lloyd-Smith, S. Funk, A. R. McLean, S. Riley, J. L. N. Wood.
    Epidemics 10:35–39.
    [PDF]

    Modeling infectious disease dynamics in the complex landscape of global health.
    H. Heesterbeek, R. M. Anderson, V. Andreasen, S. Bansal, D. De Angelis, C. Dye, K. T. D. Eames, W. J. Edmunds, S. D. W. Frost, S. Funk, T. D. Hollingsworth, T. House, V. Isham, P. Klepac, J. Lessler, J. O. Lloyd-Smith, C. J. E. Metcalf, D. Mollison, L. Pellis, J. R. C. Pulliam, M. G. Roberts, C. Viboud, I. N. I. I. D. D. Collaboration.
    Science 347(6227):aaa4339.
    [PDF]

    Seven challenges for modelling indirect transmission: vector-borne diseases, macroparasites and neglected tropical diseases.
    T. D. Hollingsworth, J. R. C. Pulliam, S. Funk, J. E. Truscott, V. Isham, A. L. Lloyd.
    Epidemics 10:16–20.
    [PDF]

    Six challenges in the eradication of infectious diseases.
    P. Klepac, S. Funk, T. D. Hollingsworth, C. J. E. Metcalf, K. Hampson.
    Epidemics 10:97–101.
    [PDF]

    Temporal Changes in Ebola Transmission in Sierra Leone and Implications for Control Requirements: a Real-time Modelling Study.
    A. Camacho, A. Kucharski, Y. Aki-Sawyerr, M. A. White, S. Flasche, M. Baguelin, T. Pollington, J. R. Carney, R. Glover, E. Smout, A. Tiffany, W. J. Edmunds, S. Funk.
    PLoS Curr 2015 Feb 10. Edition 1.
    [PDF]

    Ebola virus disease in the Democratic Republic of the Congo, 1976-2014.
    A. Rosello, M. Mossoko, S. Flasche, A. J. Van Hoek, P. Mbala, A. Camacho, S. Funk, A. Kucharski, B. K. Ilunga, W. J. Edmunds, P. Piot, M. Baguelin, J. M. Tamfum.
    Elife 4:e09015.
    [PDF]

2014

    Potential for large outbreaks of Ebola virus disease.
    A. Camacho, A. J. Kucharski, S. Funk, J. Breman, P. Piot, W. J. Edmunds.
    Epidemics 9e:70–78.
    [PDF]

    Association between recruitment methods and attrition in Internet-based studies.
    P. Bajardi, D. Paolotti, A. Vespignani, K. Eames, S. Funk, W. J. Edmunds, C. Turbelin, M. Debin, V. Colizza, R. Smallenburg, C. Koppeschaar, A. O. Franco, V. Faustino, A. Carnahan, M. Rehn, F. Merletti, J. Douwes, R. Firestone, L. Richiardi.
    PLoS One 9(12):e114925.
    [PDF]

    Ebola: the power of behaviour change.
    S. Funk, G. M. Knight, V. A. A. Jansen.
    Nature 515(7528):492.

    Detecting differential transmissibilities that affect the size of self-limited outbreaks.
    S. Blumberg, S. Funk, J. R. C. Pulliam.
    PLoS Pathog 10(10):e1004452.
    [PDF]

    Mapping Ebola in wild animals for better disease control.
    S. Funk, P. Piot.
    Elife 3:e04565.
    [PDF]

    Incidence and risk factors for influenza-like-illness in the UK: online surveillance using Flusurvey.
    A. J. Adler, K. T. D. Eames, S. Funk, W. J. Edmunds.
    BMC Infect Dis 14:232.
    [PDF]

    Determinants of follow-up participation in the Internet-based European influenza surveillance platform Influenzanet.
    P. Bajardi, A. Vespignani, S. Funk, K. T. Eames, W. J. Edmunds, C. Turbelin, M. Debin, V. Colizza, R. Smallenburg, C. E. Koppeschaar, A. O. Franco, V. Faustino, A. Carnahan, M. Rehn, D. Paolotti.
    J Med Internet Res 16(3):e78.
    [PDF]

2013

    Estimation of the quality of life effect of seasonal influenza infection in the UK with the internet-based Flusurvey cohort: an observational cohort study.
    A. Camacho, K. Eames, A. Adler, S. Funk, J. Edmunds.
    Lancet 382:S8.

    Quantifying trends in disease impact to produce a consistent and reproducible definition of an emerging infectious disease.
    S. Funk, T. L. Bogich, K. E. Jones, A. M. Kilpatrick, P. Daszak.
    PLoS One 8(8):e69951.
    [PDF]

    Using network theory to identify the causes of disease outbreaks of unknown origin.
    T. L. Bogich*, S. Funk*, T. R. Malcolm, N. Chhun, J. H. Epstein, A. A. Chmura, A. M. Kilpatrick, J. S. Brownstein, O. C. Hutchison, C. Doyle-Capitman, R. Deaville, S. S. Morse, A. A. Cunningham, P. Daszak.
    J R Soc Interface 10(81):20120904.
    [PDF] [Corrected Fig. 2]
    *: equal contribution

    Word usage mirrors community structure in the online social network Twitter.
    J. Bryden, S. Funk, V. A. Jansen.
    EPJ Data Sci. 2(1).
    [PDF]

    Identifying transmission cycles at the human-animal interface: the role of animal reservoirs in maintaining gambiense human african trypanosomiasis.
    S. Funk, H. Nishiura, H. Heesterbeek, W. J. Edmunds, F. Checchi.
    PLoS Comput Biol 9(1):e1002855.
    [PDF]

2012

    The Talk of the Town: Modelling the Spread of Information and Changes in Behaviour.
    S. Funk, V. A. A. Jansen.
    In: P. Manfredi, A. d’Onofrio: Modeling the Interplay Between Human Behavior and the Spread of Infectious Diseases, Springer, Berlin / Heidelberg, pp. 93–102.

    Using the internet to estimate influenza vaccine effectiveness.
    W. J. Edmunds, S. Funk.
    Expert Rev Vaccines 11(9):1027–1029.
    [PDF]

    Using mathematical models in a unified approach to predict the next emerging infectious disease.
    T. L. Bogich, K. J. Olival, P. R. Hosseini, C. Zambrana-Torrelio, E. Loh, S. Funk, I. L. Brito, J. H. Epstein, J. S. Brownstein, D. O. Joly, M. A. Levy, K. E. Jones, S. S. Morse, A. A. Aguirre, W. B. Karesh, J. A. Mazet, P. Daszak.
    In: A. Aguirre, R. Ostfeld, P. Daszak: New Directions in Conservation Medicine, Oxford University Press, Oxford, pp. 607–617.

2011

    Stability in flux: community structure in dynamic networks.
    J. Bryden*, S. Funk*, N. Geard*, S. Bullock, V. A. A. Jansen.
    J R Soc Interface 8(60):1031–1040.
    [PDF]
    *: equal contribution

2010

    Modelling the influence of human behaviour on the spread of infectious diseases: a review.
    S. Funk, M. Salathé, V. A. A. Jansen.
    J R Soc Interface 7(50):1247–1256.
    [PDF]

    Interacting epidemics on overlay networks.
    S. Funk, V. A. A. Jansen.
    Phys Rev E Stat Nonlin Soft Matter Phys 81(3 Pt 2):036118.
    [PDF]

    Endemic disease, awareness, and local behavioural response.
    S. Funk, E. Gilad, V. A. A. Jansen.
    J Theor Biol 264(2):501–509.
    [PDF]

2009

    The spread of awareness and its impact on epidemic outbreaks.
    S. Funk, E. Gilad, C. Watkins, V. A. A. Jansen.
    Proc Natl Acad Sci U S A 106(16):6872–6877.
    [PDF] [Corrected Fig. 2] [Simulation movies]