Bayesian inference using state-space models with high-performance hardware

rbi is an R wrapper for LibBi, or Library for Bayesian Inference. It performs fast Bayesian inference with parallelised Sequential Monte Carlo, on CPUs or GPUs.

rbi.helpers is a supporting package for rbi, especially for constructing proposal distributions and determining the number of particles.

Social contact patterns

socialmixr is an R package to estimate contact matrices from diary data such as collected in the POLYMOD study.

epimxir is an R package to conduct epidemiological analysis using these contact matrices.