Bayesian inference using state-space models with high-performance hardware
rbi is an R wrapper for LibBi, or Library for Bayesian Inference. It performs fast Bayesian inference with parallelised Sequential Monte Carlo, on CPUs or GPUs.
rbi.helpers is a supporting package for rbi, especially for constructing proposal distributions and determining the number of particles.
Social contact patterns
socialmixr is an R package to estimate contact matrices from diary data such as collected in the POLYMOD study.epimxir is an R package to conduct epidemiological analysis using these contact matrices.