Plot result of SMC

Plot the observation generated by the filtered trajectories together with the data.

plotSMC(
  smc,
  fitmodel,
  theta,
  data = NULL,
  summary = TRUE,
  alpha = 1,
  allVars = FALSE,
  plot = TRUE
)

Arguments

smc: output of particleFilter
fitmodel: a fitmodel object
theta: named numeric vector. Values of the parameters. Names should match fitmodel$thetaNames.
data: data frame. Observation times and observed data. The time column must be named as given by timeColumn, whereas the name of the data column should match one of fitmodel$stateNames.
summary: logical. If TRUE, the mean, median as well as the 50th and 95th percentile of the trajectories are plotted (default). If FALSE, all individual trajectories are plotted (transparency can be set with alpha).
alpha: transparency of the trajectories (between 0 and 1).
allVars: logical, if FALSE only the observations are plotted. Otherwise, all state variables are plotted.
plot: if TRUE the plot is displayed, and returned otherwise.