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epimixr is an R package that uses social mixing matrices to conduct epidemiological analysis. It contains the functions adjust_immunity (to adjust population-level immunity by mixing patterns as described in Funk et al., 2019), project_immunity (to estimate immunity based on vaccination data by projecting forward from a given starting point of age-specific susceptibility) and epidemic_age_dist (to estimate the age distribution of an epidemic, see also the finalsize package which implements more functionality to perform the same task).

Installation

The current development version can be installed using the remotes package

remotes::install_github("sbfnk/epimixr")