computeDistanceAbc.RdCompute the distance (using distanceAbc) between the observed time
series and a simulated time series of observations obtained by running the
model with parameters theta.
computeDistanceAbc(sumStats, distanceAbc, fitmodel, theta, initState, data)a list of functions to calculate summary statistics. Each of these takes one argument (a trajectory with an "obs" column) and returns a number (the summary statistic given the trajectory)
a function that take three arguments: sumStats, a
list of summary statistics, dataObs (the data trajectory of
observations) and modelObs (a model trajectory of observations),
and returns the distance between the model run and the data in terms of the
summary statistics
a fitmodel object
named numeric vector. Values of the parameters. Names should
match fitmodel$thetaNames.
named numeric vector. Initial values of the state
variables. Names should match fitmodel$stateNames.
data frame. Observation times and observed data. The time column
must be named "time" and the observation column must be named
"obs".
a sampled distance between